Leapp inplace upgrade from RHEL8 to 9 fails

gkardara · November 11, 2025, 1:55pm

Problem: Leapp in place upgrade for foreman/smartproxy fails. Attempting to upgrade from RHEL8 to RHEL9.

Expected outcome: Leapp should work without issues

**Foreman and Proxy versions:**3.12.1 / katello 4.14.3

Foreman and Proxy plugin versions:

**Distribution and version:**RHEL8

Other relevant data:

I try to update the RHEL from 8 to 9 using leapp tool, following the guide here Upgrading Foreman to 3.12

but after analyzing the system phase I could not find what is the issue that leapp upgrade is not continuing.

============================================================

REPORT OVERVIEW

Following errors occurred and the upgrade cannot continue:

Actor: dnf_transaction_check
Message: DNF execution failed with non zero exit code.

evgeni · November 11, 2025, 1:59pm

Without the whole output there is little we can guess.

gkardara · November 11, 2025, 2:09pm

2025-11-11 16:04:19.183558 [ERROR] Actor: target_userspace_creator
Message: Unable to install RHEL 9 userspace packages.
Summary:
Details: Command [‘systemd-nspawn’, ‘–register=no’, ‘–quiet’, ‘–keep-unit’, ‘–capability=all’, ‘-D’, ‘/var/lib/leapp/scratch/mounts/root_/system_overlay’, ‘–setenv=LEAPP_HOSTNAME=mar-linux-repo01’, ‘–setenv=LEAPP_EXPERIMENTAL=0’, ‘–setenv=LEAPP_UNSUPPORTED=0’, ‘–setenv=LEAPP_NO_RHSM=0’, ‘–setenv=LEAPP_TARGET_PRODUCT_CHANNEL=ga’, ‘–setenv=LEAPP_UPGRADE_PATH_TARGET_RELEASE=9.6’, ‘–setenv=LEAPP_UPGRADE_PATH_FLAVOUR=default’, ‘–setenv=LEAPP_IPU_IN_PROGRESS=8to9’, ‘–setenv=LEAPP_EXECUTION_ID=f5acfd9d-cbfc-4c2e-bc50-aec02bd7dd92’, ‘–setenv=LEAPP_COMMON_TOOLS=:/etc/leapp/repos.d/system_upgrade/common/tools:/etc/leapp/repos.d/system_upgrade/el8toel9/tools’, ‘–setenv=LEAPP_COMMON_FILES=:/etc/leapp/repos.d/system_upgrade/common/files:/etc/leapp/repos.d/system_upgrade/el8toel9/files’, ‘dnf’, ‘install’, ‘-y’, ‘–setopt=module_platform_id=platform:el9’, ‘–setopt=keepcache=1’, ‘–releasever’, ‘9.6’, ‘–installroot’, ‘/el9target’, ‘–disablerepo’, ‘*’, ‘–enablerepo’, ‘rhel-9-for-x86_64-baseos-rpms’, ‘–enablerepo’, ‘leapp-pulpcore’, ‘–enablerepo’, ‘leapp-foreman-plugins’, ‘–enablerepo’, ‘leapp-candlepin’, ‘–enablerepo’, ‘leapp-foreman’, ‘–enablerepo’, ‘leapp-katello’, ‘–enablerepo’, ‘rhel-9-for-x86_64-appstream-rpms’, ‘kpatch-dnf’, ‘dnf’, ‘util-linux’, ‘dnf-command(config-manager)’] failed with exit code 1.
Stderr: Host and machine ids are equal (f0a4b23fc39d4b4f88729e3ce9f08078): refusing to link journals
Errors during downloading metadata for repository ‘leapp-pulpcore’:

Status code: 404 for https://yum.theforeman.org/pulpcore/el9/x86_64/repodata/repomd.xml (IP: 151.101.130.49)
Error: Failed to download metadata for repo ‘leapp-pulpcore’: Cannot download repomd.xml: Cannot download repodata/repomd.xml: All mirrors were tried

gkardara · November 11, 2025, 3:09pm

managed to continue after adding the following

[leapp-pulpcore]
name=Pulpcore EL9
baseurl=https://yum.theforeman.org/pulpcore/3.49/el9/$basearch
gpgkey=file:///etc/pki/rpm-gpg/RPM-GPG-KEY-foreman
enabled=1
gpgcheck=0

but i getting now

Error: Transaction test error:
file /usr/lib/python3.9/site-packages/idna/init.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/init.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/init.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/codec.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/codec.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/compat.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/compat.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/core.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/core.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/idnadata.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/idnadata.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/intranges.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/intranges.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/package_data.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/package_data.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/uts46data.cpython-39.opt-1.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/pycache/uts46data.cpython-39.pyc from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/codec.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/compat.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/core.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/idnadata.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/intranges.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/package_data.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/idna/uts46data.py from install of python3-idna-2.10-7.el9_4.1.noarch conflicts with file from package python39-idna-3.3-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/init.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/init.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/init.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/_ast_gen.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/_ast_gen.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/_build_tables.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/_build_tables.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/ast_transforms.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/ast_transforms.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_ast.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_ast.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_generator.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_generator.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_lexer.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_lexer.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_parser.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/c_parser.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/lextab.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/lextab.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/plyparser.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/plyparser.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/yacctab.cpython-39.opt-1.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/pycache/yacctab.cpython-39.pyc from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/_ast_gen.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/_c_ast.cfg from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/ast_transforms.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/c_ast.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/c_generator.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/c_lexer.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/c_parser.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/lextab.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/plyparser.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/pycparser/yacctab.py from install of python3-pycparser-2.20-6.el9.noarch conflicts with file from package python39-pycparser-2.21-2.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/init.py from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/pycache/init.cpython-39.opt-1.pyc from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/pycache/init.cpython-39.pyc from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/pycache/ptyprocess.cpython-39.opt-1.pyc from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/pycache/ptyprocess.cpython-39.pyc from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/pycache/util.cpython-39.opt-1.pyc from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/pycache/util.cpython-39.pyc from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/ptyprocess/ptyprocess.py from install of python3-ptyprocess-0.6.0-12.el9.noarch conflicts with file from package python39-ptyprocess-0.7.0-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/init.py from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/init.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/init.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/_collections.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/_collections.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/_version.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/_version.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/connection.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/connection.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/connectionpool.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/connectionpool.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/exceptions.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/exceptions.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/fields.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/fields.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/filepost.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/filepost.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/poolmanager.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/poolmanager.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/request.cpython-39.opt-1.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
file /usr/lib/python3.9/site-packages/urllib3/pycache/request.cpython-39.pyc from install of python3-urllib3-1.26.5-6.el9.noarch conflicts with file from package python39-urllib3-1.26.17-1.el8.noarch
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file /usr/lib64/python3.9/site-packages/lxml/pycache/usedoctest.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/builder.cpython-39-x86_64-linux-gnu.so from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/etree.cpython-39-x86_64-linux-gnu.so from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/etree.h from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/etree_api.h from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/init.py from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/ElementSoup.cpython-39.opt-1.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/ElementSoup.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/init.cpython-39.opt-1.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/init.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/_diffcommand.cpython-39.opt-1.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/html/pycache/_html5builder.cpython-39.opt-1.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/_html5builder.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/html/pycache/builder.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/html/pycache/html5parser.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/html/pycache/soupparser.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/usedoctest.cpython-39.opt-1.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/html/pycache/usedoctest.cpython-39.pyc from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
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file /usr/lib64/python3.9/site-packages/lxml/objectify.cpython-39-x86_64-linux-gnu.so from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64
file /usr/lib64/python3.9/site-packages/lxml/sax.cpython-39-x86_64-linux-gnu.so from install of python3-lxml-4.6.5-3.el9.x86_64 conflicts with file from package python39-lxml-4.9.2-1.el8.x86_64

gkardara · November 12, 2025, 7:08am

@evgeni something is wrong with the python ? any suggestions?

evgeni · November 12, 2025, 7:18am

Nah, nothing “wrong”, you just have old packages still around. Either a dnf autoremove or a more explicit dnf remove python39\* should remove a bunch of old (unused) packages and allow you to continue.

(This has been mentioned in older Leapp upgrade posts already: Best upgrade experience ever 3.12/4.14 , Leapp upgrade with 3.11/4.13 fails - #4 by gvde , Using leapp to upgrade from Rocky 8.10 to Rocky 9 )

gkardara · November 12, 2025, 7:57am

dnf remove python39\*

and then use the leapp upgrade ?

evgeni · November 12, 2025, 7:57am

Yes.

gkardara · November 12, 2025, 8:32am

Thanks , it worked.

Total size: 1.8 G
DNF will only download packages, install gpg keys, and check the transaction.
Downloading Packages:
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Complete!
====> * add_upgrade_boot_entry
Add new boot entry for Leapp provided initramfs.
A reboot is required to continue. Please reboot your system.

Debug output written to /var/log/leapp/leapp-upgrade.log

Now need to reboot and check if it will continue and the system will be responsive

gkardara · November 12, 2025, 9:28am

Many thanks @evgeni it worked like a charm

Now need to proceed with the foreman versions (our system was in 3.12 and need to go to the latest step by step)

cat /etc/os-release
NAME=“Red Hat Enterprise Linux”
VERSION=“9.6 (Plow)”
ID=“rhel”
ID_LIKE=“fedora”
VERSION_ID=“9.6”
PLATFORM_ID=“platform:el9”
PRETTY_NAME=“Red Hat Enterprise Linux 9.6 (Plow)”
ANSI_COLOR=“0;31”
LOGO=“fedora-logo-icon”
CPE_NAME=“cpe:/o:redhat:enterprise_linux:9::baseos”
HOME_URL=“https://www.redhat.com/”
DOCUMENTATION_URL=“https://access.redhat.com/documentation/en-us/red_hat_enterprise_linux/9”
BUG_REPORT_URL=“https://issues.redhat.com/”

REDHAT_BUGZILLA_PRODUCT=“Red Hat Enterprise Linux 9”
REDHAT_BUGZILLA_PRODUCT_VERSION=9.6
REDHAT_SUPPORT_PRODUCT=“Red Hat Enterprise Linux”
REDHAT_SUPPORT_PRODUCT_VERSION=“9.6”